PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 209401 (532 amino acids)

SeqID: 209401 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16129225: component I of anthranilate synthase [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>209401
MEMDDAKRPAGAKRRTGGEEDAGRVAGHATTQDNAHAMPSTQAGTQAGGAGAHADANPAG
CPDGRIVLRQSCSLLEGDVDTPISLFLGMVGSGQGILLESAEVDGRWGRYSIIGFNFLLR
LGCAAGRLEVAVRDPRLAALKELEGMPFIEGVRAVMRRLTIEPDPDFANQPPITRALYGY
MGYGVAGLLEPKLAPVLRAEAAEACLALPGTVVVFDHLYNRLTMLSLTDRNGLRIDRSVL
DRAPQTPEVGPTRAVPDESAYKRAVERTREMIRQGEAIQVVLSTRFQASFNGDPFTLYRR
LRRINPSPYMFFMRLPGVSLLGSSPEVMVRCSKGRLQVSPIAGTRPRGVDDVEDARLAAE
LLDDPKERAEHVMLVDLGRNDLGRIAAPGTVQVERFMEVEKFSHVMHLTSRVTADLAEGH
DALDVLTATFPAGTVSGAPKVRAMEIIAEAEGQPRGPYAGCIGWFGLDRDSVSLDTGITI
RSMWVREGQVHWQAGAGIVFDSKPAAEWKECCNKAAAMRAALDGGCHVPAHR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory