PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 349829 (503 amino acids)

SeqID: 349829 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [5 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118129: Sulfate/thiosulfate import ATP-binding protein cysA]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>349829
MLWQSIYLVALIAGIPGMTYFAQTSLRRAKAEVINPDEEIRISVRNLVKIYDWPGHISRQ
WNSGLQLRKRLGLSNEYHSLKDFINVLWQFGILLFAIYFTYFFIHNRLWIFLFSFAIYAA
VLYLWRKVRSYLYYRYGDNRVTKIVNRVIFWSLPPLILFQLFRKLDNNGLVIMIGLLWLV
GIAIYVTSQYLYDHDVNIERVTGRFAGLRRSYFRMVKSVPMIGKRRKPFKALRGVSFEIQ
TGMFGLLGPNGAGKSTLMRVICGIFEQSYGSIWINGLDTRIYREELQSLIGFLPQEFGTY
ENMTSWEFLDYQAILKGIVDGDLRRERLDYVLKAVHMYERKDEKIGSFSGGMKQRIGIAL
ILLHLPRILVVDEPTAGLDPRERIRFRNLLVELSKDRIVIFSTHIIEDISSSCNQVVVIN
KGELKYFGDPSDMVEMANGKVWQFNIDKTEFEKVLDKSLVIHHIQEGDTIRVRYLSVGQP
YEGAVEVEANLEDAYLCLLKNMN