PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 350082 (614 amino acids)

SeqID: 350082 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 62297827: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>350082
MCGIVGYIGKRKAYPILIKGLKRLEYRGYDSAGVALISDNQQLNVYKTKGKVSELENFVT
QKDISGTVGIAHTRWATHGEPCSVNAHPHYSSSEKLALIHNGIIENYAVLKEKLQAKGYV
FKSSTDTEVLVQLIEYMKVTNRVDLLTAVQLALNEVIGAYAIAILDKEHPEEIIAARKSS
PLVVGIGEDEFFLASDATPIVEYTDKVVYLEDGEIAVINRGKELKVVDLSNVEMTPEVKK
VELKLGQLEKGGYPHFMLKEIFEQPDCIHDCMRGRINVEANNVVLSAVIDYKEKLLNAKR
FIIVACGTSWHAGLIGKHLIESFCRIPVEVEYASEFRYRDPVIDEHDVVIAISQSGETAD
TLAAVELAKSRGAFIYGICNAIGSSIPRATHTGSYIHVGPEIGVASTKAFTGQVTVLTML
ALTLAREKGTIDETQYLNIVRELNSIPGKMKEVLKLNDKLAELSKTFTYAHNFIYLGRGY
SYPVALEGALKLKEISYIHAEGYPAAEMKHGPIALIDAEMPVVVIATQNGLYEKVLSNIQ
EIKARKGKVIAFVTKGDTVISKIADCSIELPETIECLDPLITTVPLQLLAYHIAVCKGMD
VDQPRNLAKSVTVE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory