PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 350090 (489 amino acids)

SeqID: 350090 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 7404442: Ribose import ATP-binding protein rbsA]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>350090
MEKGEPIVVVKEISKSYGKVEALKEVSFAVEQGEVFGLIGPDGAGKSTLFRILTTLLLAD
KGTATVNGLDVVTDYKQIRTKVGYMPGRFSLYQDLSVEENLEFFATVFHTLIQENYDLIK
DIYQQIEPFKKRRAGALSGGMKQKLALSCSLIHKPDILFLDEPTTGVDPVSRKEFWQMLR
NLRKQGITIIVSTPIMDEARQCDRIAFINHGQVHGIDTPERILQKFASILCPPPLEREEA
QQMAAPVIEVEQLTKSFGHFTAVDHISFQVQRGEIFGFLGANGAGKTTAMRMLCGLSRPT
SGVGKVAGYDIFREAEQVKRHIGYMSQKFSLYEDLKVWENIRLFAGIYGMKEMEIEEKTD
ELLERLGFADERDTLVKNLPLGWKQKLAFSVSIFHEPKIVFLDEPTGGVDPATRRQFWEL
IYQAADRGITVFVTTHYMDEAEYCNRISIMVDGQIKALDTPARLKEQFGVETMDDVFQQL
ARHAVRKAD

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory