PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 350587 (309 amino acids)

SeqID: 350587 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2506453: GDP-L-fucose synthetase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>350587
MKRILVSGGAGFIGSHLCTRLVNEGHDVICLDNFFTGSKDNIKHLMGNHHFEVVRHDVTY
PYSAEVDEIYNLACPASPIHYQHDPIQTAKTSVMGAINMLGLAMRLDAKILQASTSEVYG
DPIIHPQPESYWGNVNPVGYRSCYDEGKRCAETLFMDYYRQNQTRIKIIRIFNTYGPRML
PNDGRVVSNFIIQALNNEDITIYGDGKQTRSFQYIDDLIEGMVRMMDTEDDFTGPINIGN
PNEFPVLELAERVIRMTGSTSKIVFKPLPTDDPKQRQPDIKLAKEKLGWQPTVELEDGLK
RMIEYFKNV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory