PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 350981 (499 amino acids)

SeqID: 350981 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [13 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 20138535: L-lactate permease]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>350981
MTLILAIIPVLLLIVLMAFFKMSGDKSSIISLIVTMLIALFGFAFSVDNLFYSFLYGALK
AVSPILIIILMAIFSYNVLLKTEKMEIIKQQFASISTDKSIQVLLLTWGFGGLLEAMAGF
GTAVAIPAAILISLGFKPIFSATVSLIANSVATAFGAIGTPVLVLAKETNLDVLQLSTNV
VLQLSVLMFLIPLVLLFLTNPKLKALPKNIFLALLVGGVSLVGQYLAARYMGAESPAIIG
SILSIIVIVLYGKLTASKEEKARKSTLKTKDILNAWSIYLLILFLIILTSPLFPSLRSTL
ENNWVTRISLPVNATTVNYTISWLTHAGVLLFLGTFIGGLIQGAKVKELFIVLWNTVKQL
KKTFITVICLVGLSTIMDTSGMIAVIATALATATGSLYPLFAPVIGCLGTFITGSDTSSN
ILFGKLQASVAGQIHVSPDWLSAANTVGATGGKIISPQSIAIATSAGNQQGKEGEILKAA
IPYALAYVVITGIIVYIFS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory