PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 352642 (1106 amino acids)

SeqID: 352642 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 20141685: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>352642
MVQRPQDKKFLVKMLDESSQIRDRRILAKRIKTLLDQYGVPEFLNKRDSFLFKMYQAFGH
HFDFIAIPIIKKRLRMNTSQVIINEARPQLTKHLAIRAKEKIGQNVNLLGEVVLGNGEAD
HRYHHYLKALESPDINYISVKISGIYAQTHALNYEESFPELISRMSALYQKAIDFPYTDE
EGVRRSKFINLDMEEYKDTHFTLRLFKTVLSLPQFKNYSAGIVVQAYLPDAYDFQTELIE
FAKARVAEGGAPIKMRLVKGCNLEMETVISSLRGWPNPIRPSKEEVDANYLHLLERALMP
ENARVLHLGVASHNLFSIAYAYLLAQKYGTAEYMTFEMLEGMANHLWRAQSMLGNRVILY
TPVVKNEHFLNAVSYLVRRMDENTAPDNFLTHSFNLRPNTKEWDFLAKQFEDAYAMKDQL
SHVSPRTQNRNLPYTPVPPADVLKNEPDTDFDLPQNQEWVRSIFSKWKKDGTEQPEIIPL
QIGAETVVCESRYPYTDRCQDDEVCICEMSQADSAQVEKIIEIAEADPAGWRKTTLEERH
RIMYEAANRLADMRGDLIGCMCAVTGKTVIEGDVEVSEAVDYARFYTTAMKKFAALDDVE
MKPKGTILVISPWNFPCAIPVGGIVAGLAGGNTVILKPATVAAPVAWMFAKAFWDAGVPK
EALQVIITRREALKVLTTAPAIKHIILTGGTDTAQNIAKANPTTPLSAETGGKNVIILTA
SGDRDHAIMNIVTSAFGNAGQKCSACSLLLVERSVYEDENFRSKLKDAATSLKTGSVWNA
GNIVGPMITNKNDKLLQAFNLEPGESWLVPPRFIDRREYILAPTVKWGVKPESFSFRTEL
FGPLLSVACIENLEEGIRLVNGLDYGLTSGLQSLDEKEQKLWKNSVMAGNLYINRGITGA
IVNRQPFGGMKLSAFGGGIKAGGPNYCTCFLEITDKPDSRTDYRQSYAKAYQEEFSKPRD
VNRLYGEQNLFRYLPLKNMILRLFPKDTDEEATMIAHAARICRTPLTISFGPTDDRSSRL
AGLGCTLRKESLEDFLKELPEYERVRTCSPDIPDVMYERAAETNKYIATAPPVKQGRIEL
IHYIKEQSIAFEYHRYGSISEVPPCE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory