PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 352706 (1024 amino acids)

SeqID: 352706 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.50
    OuterMembrane          2.50
    Periplasmic            2.50
    Extracellular          2.50
    Cytoplasmic            0.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>352706
MIKMNNLLKPFFLMMLAAPAIISTTAQQQQPEWQSQYAVGLNKLDPHTYVWPYADASEVE
KGTFEQSPYYMSLNGQWKFHWVKNPDTRPKDFYKPSYYTGGWADIKVPGNWERQGYGTAI
YVNETYEFDDKMFNFKKNPPLVPYKENEVGSYRRTFKVPAGWEGRRVVLCCEGVISFYYV
WVNGEFLGYNQGSKTAAEWDITDKLTDGENTIALEVYRWSSGAYLECQDMWRLSGIERDV
YLYSTPEQYIADYKVTSLLEKEHYKEGIFELEVAVGGTASGTSSIAYTLKDASDKTVLEG
SRKLESHGSGNLIVFDEQRLPDVRRWNAEHPELYTLLLELKDAGGKVTEITGTKVGFRTS
EIKNGRFCINGVPVLVKGVNRHEHSQLGRTVSKELMEQDIRLMKQHNINTVRNSHYPAHP
YWYQLCDRYGLYVIDEANIESHGMGYGPASLAKDSTWLPAHIDRTRRMYERSKNHPSVVI
WSLGNEAGNGINFERTYDWLKSVEKNRPVQYERAEENYNTDIYCRMYRSVDVIRNYVARK
DIYRPFILCEYLHAMGNSCGGMKEYWEVFENEPMAQGGCIWDWVDQSFREVDKDGKWYWT
YGGDYGPKDVPSFGNFCCNGLVNAVREPHPHLLEVKKIYQNIKSTLIDKKNLTVRVKNWF
DFSDLNEYILHWKVTGDDGTVLAEGNKEVACEPHATVELTLGAVQLPKTIREAYLDLGWT
RKKSTPLVDTAWEIAYDQFVLPASGKVWNGKPSEAGKTTFEVDENTGALKSLCLDGEELL
ASPVTISLFRPATDNDNRDRMGAKLWRKAGLHTLTQKVVSLKESKTSATAQVNILNVTGK
KVGDATLEYTLNHNGSLKVQTTFQPDTTWVKSIARLGLTFEMNDTYGNVTYLGRGEHETY
IDRNQSGKIGIYTTTPEKMFHYYVIPQSTGNRTDVRWVKLADDSGKGCWIESDSPFQFSA
LPFSDLLLEKALHINDLERNGRITVHLDAKQAGVGTATCGPGVLPPYLVPLGKQTFTFTI
YPVK