PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 352820 (1421 amino acids)

SeqID: 352820 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.84
    Extracellular          0.14
    CytoplasmicMembrane    0.01
    OuterMembrane          0.01
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.84

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>352820
MKLRIMRSAWIALLFMSLSVTAQTTDKPEWSNELVSGVNKEEAVQIAIPFTDEQQAMNLT
IEESPYYKTLNGIWKFHWVADPKDRPQDFCKPEYDVSQWDNIKVPATWQIEAVRHNKNWD
KPLYCNVIYPFCEWDWKKIQWPNVIQPRPSNYTFATMPNPVGSYRREFILPDSWKGRDIF
IRFNGVEAGFYIWVNGKKVGYSEDSYLPAEFNLTPYLKAGKNVLAVEVYRFTDGSFLECQ
DFWRFSGIFRDVFLWSAPKTQIRDFFFRTDLDKEYKNASVSLDIDITGKRSNNEIQVKVT
DQNGKEIATQNARAVTGTNKLQFEVVNPLKWTAETPNLYNLTILLKQKGKTVDIRSVKVG
FRKIELAQDGRLLINGKSTLFKGVDRHDHSSENGRTVSKEEMEKDVQLMKSLNINAVRTS
HYPNNPYFYDLCDRYGIYVLSEANVECHGLMALSSEPSWVKAFTERSENMVRRYKNHASI
VMWSLGNESGNGINFKSAAEAVKKLDDTRPTHYEGNSSYCDVTSSMYPDVQWLESVGKER
LQKFQNGETVKPHVVCEYAHAMGNSIGNFKEYWETYERYPALVGGFIWDWVDQSIKMPAP
DGSGYYMAFGGDFGDTPNDGNFCTNGVIFSDRTYSAKAYEVKKIHQPVWVEAMGNGTYKL
TNKRFHAGLDDLYGRYEIEEDGKVVFSANLEELSLNAQDSKVITIADNQINKIPGAEYFI
KFRFCQKQDTEWEKAGYEVASEQFKLSDSAKPVFKAGEGSIDLIETDDAYLVKGSQFEAS
FSKQQGTISSYTLNELPMISKGLELNAFRAPTDNDKQVDGDWYQKGLYQMTLEPGHWNVR
KEDNKVTLQIENLYRGKTGFDYRTNIEYTVAADGSILVNSTIIPSTKGVIIPRIGYRMEL
PEGFERMRWYGRGPLENYVDRKDATYVGVYDELVSDQWVNYVRAQEMGNREDLRWISITN
PDGIGFVFIAGDKMSASALHATAQDMVDPANHRRLLHKYEVPMRKETVLCLDANQRPLGN
ASCGPGPMQKYELRSQPTVFSFIILPLERSYSTEELIKKARVQMPVCMPVLIERDNNGYL
NLKTNTPGATVHYSLNGGEEKIYTEPFEFISGGHVEAYAVSEQLGKSARTSAEFPIYVDR
SLWKIVSVSSENGGEEARNAIDGDLNTIWHSRWNDPVAKHPHEIVVDMSSSLEIDKFIYQ
PRNSENGRIKDYELYFSKDGKNWENKTKGRFENSSSAQFVTLEKPIVARYFKLIALSEIY
GRDWASAAELNVNAVRNLSGASEERQKVVYADSDADGSMKLAADGDINTFWHTVHNQFYL
APYPHEIQIALAKETTVKGLKYTPRQDSSEGRIGKYEVYISHDGKEWGKAVASGTFADSK
EVQTVEFNPCKARYVKLQALSAVIKEAKMAAVAELEVLLAE