PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 352867 (1036 amino acids)

SeqID: 352867 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.50
    OuterMembrane          2.50
    Periplasmic            2.50
    Extracellular          2.50
    Cytoplasmic            0.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>352867
MKKQLLSCCLAALGLTTAIQAQNFNEWKDPEVNSVNRSAMHTNYFAYASADEAKAGSKED
SQNFMTLNGLWKFNWVRNADARPTNFYQTSFNDKGWDNIKVPAVWELNGYGDPIYVNVGY
AWRNQFQNNPPLVPTENNHVGSYRKEIVLPADWKGKDIFAHFGSVTSNMYLWVNGRYVGY
SEDSKLEAEFDLTNYLKPGKNLIAFQVFRWCDGSYLEDQDFFRYSGVGRDCYLYARDKKR
IQDIRVTPDLDSQYKDGTLNIAIDMKGSGTVALDLTDAQGKSVATADLKGSGKLNTTINV
ANPAKWTAETPNLYTLTATLKNGSTVTEVIPVKVGFRKIELTGGQILVNGQPVLFKGADR
HEMDPDGGYVVSLERMIQDIKVMKQLNINAVRTCHYPDDNRWYDLCDQYGLYVVAEANVE
SHGMGYGDKSLAKNPIYAKAHMERNQRNVQRGYNHPSIIFWSLGNEAGMGPNFEHCYTWI
KNEDKTRAVQYEQAGTSEFTDIFCPMYYDYNNCIKYCEGNIDKPLIQCEYAHAMGNSQGG
FKEYWDITRKYPKYQGGFIWDFVDQSCHWKNKDGVAIYGYGGDFNKYDASDNNFNDNGLI
SPDRVPNPHAYEVGYFYQNIWTTPADLSKGEINIYNENFFRDLSAFYLEWQLLANGEIIQ
NGIVSDLNVAPQQTAKLQLPFDIKNICSCKELLLNVSYKLKAAETLLPAGETIAYDQMSI
RDYKAPELKLENKQSSNIAVVVPSFQDNDHNYLIVSGEDFTLEFNKHNGYLCRYDVSGTQ
LMEDGSALTPNFWRAPTDNDFGAGLQHRYGAWKNPELKLTSLKHDIENEQAVVRAEYDMK
SIGGKLFLTYAINNKGAVKVTQKMEADKSKKVSDMFRFGMQLRMPVTFNEIEYYGRGPGE
NYSDRNHAARIGKYRQTVEEQFYPYIRPQETGTKTDIRWWRLLNIGGNGLQFVADAPFSA
SALNYTIESLDDGAGKDQRHSPEVEKANFTNFCIDKVQTGLACVNSWGAIALEKYRLPYQ
DYEFSFIMNPVYHKLK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory