PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 354204 (411 amino acids)

SeqID: 354204 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597639: L-serine dehydratase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>354204
MVLTKAHPSMKSIKELYRIGTGPSSSHTMGPRKAAEMFVERHPDAASFKVTLYGSLAATG
KGHMTDVAIIDTLQPAAPVEIVWQPKVFLPFHPNGMTFAALDADNKILENWTVYSIGGGA
LAENNDNPTIESPEVYGMNNMTEILQWCERTGKSYWEYVKECENEDIWDYLAEVWDTMKD
AIHRGLEAEGVLPGPLNLRRKASTYYIRATGYKQSLQSRGLVFSYALAVSEENASGGKIV
TAPTCGSCGVMPAVLYHLQKSRDFSDMRILRALATAGLIGNIVKFNASISGAEVGCQGEV
GVACAMASAAANQLFGGSPAQIEYAAEMGLEHHLGMTCDPVCGLVQIPCIERNAYAAARA
LDANLYSAFTDGMHRVSFDKVVQVMKQTGHDLPSLYKETSEGGLAKDYQQM

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory