PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3606963 (337 amino acids)

SeqID: 3606963 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 132121: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3606963
MKNLMLGTALACATMSGAALADTTSACLITKTDTNPFFVKMREGAVAKAEELGVELKTFA
GKFDGDHETQVQAIETCILDGAKGILITASDTSSITGAVQQARDAGLVVIALDTPLTPAD
AADATFATDNYVAGLLIGQWARAQMGDAAADAKIAMLNIQVSQPTVGVLRNQGFLEGFGI
DIGDPNRWGDETDPRIVGQDVTQGSEEGGRAAMENILAADPMVNVVYTINEPAAAGAYEA
LKAIGRENDVLIVSVDGGCPGVQNVADGVIGATSQQYPLLMASLGIEAIKTWAETGEKPA
PTPGKDFFDTGVALVTDTPADGVESISVEEGRNLCWG