PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3607214 (531 amino acids)

SeqID: 3607214 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 12230912: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3607214
MPETDAKLHDLFIIGGGINGCGIARDAAGRGLSVALAEMNDLASGTSSGSTKLFHGGLRY
LEYFEFRLVREALIEREVLLRAMPHISWPKRFVLPYHPDMRFEGQTPTSKLLGIFMPWMK
GRRPAWLIRLGLFLYDNLGGRKILPGTETLSLQGTPEGAPLEPRFEKAFEYSDCWVEDSR
LVVLNARDAEARGAEIHMRTKVVATERHADHWRIETQEADTGTRRSFRAKMLVNAGGPWV
AELLTGTLRLNVPDTVRLVRGSHIVVPKLYDHDKCYFFQGTDGRIIFAIPYETDFTLIGT
TDAEHPDPSQKPECTPEERDYLLAFANQYFKQDITAEDVVWTYSGVRPLYDDGASSVTAA
TRDYTLKTDAAAGAPVLNVFGGKITTYRRLAESALAQIGAQLPVGAGPWTAGVALPGGNF
PVDGVEELIAQLRAAYPFLSARWATRLIRAYGRDAWEVLGDAKTEADLGEGFGATLTARE
VRWLMTREYARQAEDVVWRRSKLGLRMSAEEIVTLDRWMQAARRTLPQSAA