PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3607360 (359 amino acids)

SeqID: 3607360 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 3024771: Tartrate dehydrogenase/decarboxylase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3607360
MSRNAYRIAVIPGDGIGTEVVPEGLKVLTAAARKFDIGLEFETHDFASAAYYQAHGQMMP
DDWKSRIGDSDALYFGAVGWPDMVPDHVSLWGSLLKFRREFDQYVNLRPVRLMPGVTSPL
AGRAPGEIDFWVVRENTEGEYSSIGGRIFEGTERETVMQETVMTRVGVDRVLRFAFELAQ
SRPKKHLTSATKSNGISITMPYWDERVVEMAKGYPEVAVDKYHIDILTAHFVLHPDWFDV
VVASNLFGDILSDLGPACTGTIGIAPSGNINPERDFPSLFEPVHGSAPDIAGKGIANPVG
QVWAGAMMLDHLGQGEAAAAIVAALEEVLADPVRRTADLGGQAGTVACGDAIVAALERL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory