PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3607790 (264 amino acids)

SeqID: 3607790 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599013: extragenic suppressor protein SuhB[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3607790
MAIGSANLNVMIKAARAAGRSLVKDFREVENLQSSMKGAGDFVSRADLRAQEILENELRE
ARPNYGWLAEEAKEEVIGKDPTRRWIVDPLDGTTNFLHGMPHWAVSIGLEHKGDVVAGVV
FDPAKDEMFFAEKGQGAWMNQTRMRVSGRRMMIESVFATGLPFANNAYLPATLKDLGQLL
PQCAGVRRWGAAALDLAYVAAGRYEGYWERGLKPWDLAAGIVLVREAGGLVEPIREDQLL
LEDGHILAASEPMFGKFAATIRKS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory