PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3607810 (504 amino acids)

SeqID: 3607810 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3607810
MDIFPLLAEGFATSLSPLNIFIVLIGVTVGLFIGAMPGLGSVNGVAIVLPLTFVVPPASA
IILLCAIYYGAMYGGAVSSILLGIPGASTAVATTFDGRPMAQKGEAGLALIAAAVASFIG
GTISVILFTAFAIPLADLALAFGPAEEFALVLLAFTTFVGLGGDDALKTIVMICLGLVLS
TVGLDLISGQPRLIFGDLPGFYSGISFLVLAIGVYGIGEILYTIETSKKSPTVTAAKITF
SELGAGLRRMNKLWKTMSMGSFLGFFVGMLPAAGATPAALMAYGIARTTSKKSENFGKGE
IEGVAAPETANNAASTGSLLPMLTLGIPGSPTTALLLGGMVMWGLVPGPMLFIEQPDFVW
GMISSLYTANVAAVLINLALIPLFVWALRMPFTVLCSVVVVLCIVGGFAPSQKIHDVWLI
AAFGILGYILRKADYPLAPLVLALVLGPLMEKSFRQSLVMEQGNVFVFVERPLSATFMVL
ALIFFLLPLLKYLKKPAKKPVAVK