PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3607836 (569 amino acids)

SeqID: 3607836 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595550: dihydroxy-acid dehydratase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3607836
MTTDRRNRAWYGKLDKDGFIHRSWMKNQGFPDHVFDGRPVIGICNTWSELTPCNHGLRTL
AEGVKRGVWEAGGFPVEFPVMSLGETQMKPTAMLFRNLLAMDVEESIRAYGMDGVVLLGG
CDKTTPGQLMGAASVDLPSIVVSAGPMLNGKYRGQDIGSGTDVWKFSEAVRAGEMTLADF
MNAEAGMSRSAGVCMTMGTASTMASLVEAMGMSLPLNAALPAVDARRMALAHLTGKRIVE
MVEEDLRPSAILTKPAFENAILANAAVGGSTNAVMHLLALAGRAGVDLTLKDFEIGGEIP
LLVNCMPSGKYLMEDFAYAGGMPVVLSELRDHLRPATTVLGKDIAAYTEGAECFNRDVIH
AYDAPVKPAAGLRVLRGSLAPDGAIVKPSAATDALLEHEGPAFVFENIEDMKANIDRDDL
PITPDTILVLKGCGPKGYPGMPEVGNMPIPAKLVREGVRDMIRVSDARMSGTAYGTVILH
VAPEAQAGGPLALVKTGDRIRVSAREGVLDLLVDATELAARRAAWQPDPPHYTRGYAKLY
IDHVLQADRGADLDFLVGKDTRPVTRESH

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory