PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3607874 (933 amino acids)

SeqID: 3607874 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16131905: formate dehydrogenase-H, selenopolypeptide subunit [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3607874
MADGAQLRTVTFTLDGQTVTAEAGQTIWEVANGRGLKIPHLCHKPAPGYRPDGNCRACMV
EIEGERVLAASCIREPSEGMVVTTSSARAETARKMVVEMLVTDQPARAEAHDRSAHFWDM
ADAAGVTESRFPKLEGPRIPLLDDSHVAMRVNLDACIQCGLCVRACREVQVNDVIGMAGR
GHDAYPVFDLDDPMGDSTCVACGECVQACPTGALMEAKLLDEAQQGDSKDFDDEVSSICP
FCGVGCQVSLKVKDGAIVKADGINGPANEGRLCVKGRFGFDYIHHPHRLTKPLIRRDDAP
EKGLNVDPGNPWTHFREATWEEALDAAAHGLGDLRSFYGGKSVAGFGSAKCTNEEAYLFQ
KLIRQAFGHNNVDHCTRLCHASSVAAMMENIGSGAVTATFNEIENADVAIVIGANPTENH
PVAATFFKQFAKRGGELIVLDPRGQALKRHAAHMLQFRPGTDVALLNGIMNVIVEEKLYD
RQYIEGFTEGFFEFREHIRAFTPERMAELCGIEAAQIRAVARSFARARAGMIFWGMGVSQ
HIHGTDNARCLISLALLCGHVGRPGTGLHPLRGQNNVQGASDAGLIPQVLPDYQNVTDPE
VRELFRHIWKGTQIDATPGLTVVEIMDRVYRGEIRGMYILGENPAMSDPDVEHARKALAH
LDHLVVQDIFLTETANYADVILPASAFPEKTGTVTNTNRQVQMGRKAVDAPGEAREDWRI
IVDMANRLGLDWDYDTPRMVFNEMKMSMRSLHHITWSRLENEGAVTYPSLSNDDPGQPIV
FGDGFPRRAGRAMFTPARVTPPAEVPDERYPMILTTGRQLEHWHTGSMTRRASVLDAVEP
EANCSLHPKTLRKLGVEPGGHVRLTTRRGTITVMARADRAVAEDMVFLPFAYVEAAANIL
TNAALDPYGKIPEFKFAAVRVENPLDDPQVAAQ

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory