PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3607880 (388 amino acids)

SeqID: 3607880 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3607880
MPIKNRFAELLPEITAWRQDFHAHPELLFDTHRTAGIVAEKLHAFGCDEVVEGLGRTGVV
GVIKGRQTGSGRVIGLRADMDALPIPEETGVPYASKVPGKMHACGHDGHTAMLLGAAKYL
AETRNFDGTCVVIFQPAEEGGGGGREMVEDGLMERFGIEEIYGMHNWPGVPTGSFAIRPG
PFFAATDQFDIVIKGKGGHAAKPQETVDPTVAASQVVLALQTIASRNADPIRQIVVSVTS
FQTSSTAFNVIPQQVALKGTVRTLDEDVRAMAERRLTEIATGIAQAMGAEAEVQYHKGYP
VMVNSGPETEFAADVARKVSGDCAEAPLVMGGEDFAYLLNARPGAYILVGNGDTAAVHHP
AYNFNDEAIPAGCSWWAEIVETRLPIAS