PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3607892 (534 amino acids)

SeqID: 3607892 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598084: geranyl-CoA carboxylase, beta-subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            6.49
    CytoplasmicMembrane    3.24
    OuterMembrane          0.14
    Extracellular          0.14
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3607892
MKLNTNWVAGTSEGAANRAAHLAALAQVSQVAALAAAGGGEAARARHVARGKMLPRDRVA
NLLDPGSPFLEVGATAGHGLHDGAAPCGGAIAGVGRVHGQDVMVVCNDATVKGGTYYPIT
VKKHLRAQEIAAECHLPCIYLVDSGGANLPNQDEVFPDRDHFGRIFYNQARMSAAGIPQI
AVVMGSCTAGGAYVPAMSDVTIIVKAQGTIFLAGPPLVKAATGEVVSAEDLGGGDVHTRL
SGVADALAEDDAHALALARQAVASLNRAAPSSVVWQSPEAPAYDPEELLELVPASLSVPY
DIHEVIARIVDGSRFDAFKPRFGETLVTGFAHIEGCPVGIVANNGVLFSEAAQKGAHFVE
LCSQRKIPLVFLQNITGFMVGRQYENEGIARHGAKMVTAVATTAVPKITMVVGGSFGAGN
YGMAGRAYQPRFMWSWPSSRISVMGGAQAAGVLATVKRDAIERKGGSWSAQEEAAFKQPT
IEMFEAQSHPLYASARLWDDGIVDPRKSRAVLSLSLRAALNAPIEETRFGVFRM

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory