PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3607893 (661 amino acids)

SeqID: 3607893 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597208: methylcrotonyl-CoA carboxylase, alpha-subunit (biotin-containing)[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3607893
MFERILIANRGEIACRVIDTCRRLGVQTVAVHSDVDAGARHVAMADMAVNLGGAAPRDSY
LRGEAIIAAARATGAEAIHPGYGFLSENPDFVEAVAAAGLVFIGPSAAAIRAMGLKDAAK
ALMAEAGVPVVPGYQGADQDPARLAAEAEAIGYPVLIKAVAGGGGKGMRRVEGPEGFAGA
LEAARAEARGAFGNDHVLLEKYVATPRHIELQVFGDGARAVHLFERDCSLQRRHQKVIEE
APAPGMTPEMRAAMGAAAVRAAEAIGYAGAGTVEFIVDASDGLRPDRFWFMEMNTRLQVE
HPVTEAVTGVDLVAWQLRVASGEPLPARQEDLSLRGHAFEARLYAEDVPKGFLPATGRLT
HLAFPADARIETGVRAGDEISPWYDPMIAKLVVHGPTRQSALRKLDRVLAGCEVAGSVTN
LAFLRALARHGGFFAGEVDTGLIDREVETLSPAPVPCSRARALAALGAAGLHEGGPDGAG
FTLWAPLVQAQGLRFGEAEIEARIETRGAGSFRVGIGEATHEITRRGGAWWVDGAPTPAR
IVVHAAGVSVFWGNNYHFTAPDPLHRAGAAGPGAGHVEAPMPGLVKAVFVAPGDTVAQGA
RLAILEAMKMEHTLTAGRDGVVSEVLVAEGAQVSAGAPLILLAPDETPNERTDESPEEAA
E

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory