PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3607933 (362 amino acids)

SeqID: 3607933 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118129: Sulfate/thiosulfate import ATP-binding protein cysA]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Cytoplasmic            0.01
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.99

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3607933
MKHQPIPRLEVSHLVRDFQGQRVVDDVSIRVMPGQVTCLLGPSGCGKSTTLRIIAGVDRQ
DSGTLTVDGEVVSSDDIHLPPEARSVGLMFQDFALFPHLCVADNVGFGLSGSRKEKRARA
HELLDRVGLLGDAGKFPHQLSGGEQQRVALARAIAPRPRVMLMDEPFSGLDNRLRDGIRD
ETLEVLKDEGTAVLLVTHEPEEAMRMADNIALMRGGKIVQQGAPYNVYNSPVDKAAAAFF
SDINVIESTVQGALTETPFGQFLAPGVPNGGRVEIVIRPQHLRIDFDRNGQGPLPTPQDG
TPARGTVQRARFMGAESLVEFRMDFDDVILRAKVPGVFMPKPGTVLWLSMRRDRCFVFPA
RD

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory