PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3608029 (513 amino acids)

SeqID: 3608029 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [10 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 20141693: Glycine betaine/L-proline transport system permease protein proW]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3608029
MKDSDINPLEDTESAAALAYAADRRANIATFVRTNPDYYAAMFDKIGASSKFVPTINLMA
GLFGPVWFGARGLWNWALAFLILETLALVQIARGLFGDLAADAMARIASIEGTLELRRQQ
LAAAIESGSDRVDAFRRTVESLEANIGGIRAEAEAMAAEGPTIALTGLVLLILAKIAQAV
IANTALEARFSEWLSDRSIRSGMPPQHIVLSAIFMGLIVATAMVHYSFPGRFDLLSTFPT
DPDIRLTGIAWVEDFIAWTVRNTEAFFDALTFGIRTLLDALEVILVQTPWIVIASLIVLL
TWLTAGLRTAIYSSAFLAYMGLLGFWEAAMTTLALLGTAACLSIVIGIPLGMFAARRPRF
YAFIQPIMDFMQTMPAFVFMVPVIAFFGVGKPAAVIVTMIFGGTPVVRLTVLGLRGVPES
VREAAISFGANKWYLLTKVDLPLAGPSIRAGINQTIMLSLAMVVVASLIGAKGLGEDVLE
ALQYANVGQGILAGFSILFCAMILDRIVQGARK