PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3608360 (1135 amino acids)

SeqID: 3608360 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3608360
MSLQDIRLSDRYDLDRETVLLNGTQALVRLTLMQAARDRAAGLNTGGYVTGYRGSPLGAV
DQQMGRNLDLLREAGVIFEPGLNEDLAATALWGTQQAELRGEGSRDGVFGMWYGKGPGVD
RSGDVMKHANLAGTSPHGGVLFVMGDDHTGESSTTCHQSEFALLDAYMPVLSPAGVQEIL
DYGLFGWALSRYAGVWVGLKAMKDTVEATAVVDGRADRMRFVTPDYAMPEGGLNIRLVDH
WTPQEERLIAHKRYAAEAFGHANGIDKRMLGKPGAKIGFLAAGKNWLDLAHALDLLGIDG
ARAEALGITAYKVGMTWPLDVKGFLGWAEGLDVIVVVEEKRKLLEVQVKEAIFNDRRGRR
VYGGQKAPGEVLFPAYGALDPVTIAEKLGQILIEEGRASEDLEARLARLAEVRRADNAKD
LAARTPYFCSGCPHNTSTRVPEGAIAYAGIGCHVMAMWMDRDTNGYTHMGAEGANWIGEG
KFSTRSHVFQNLGDGTYNHSGIQAIRAAHAAKANITYKILFNDAVAMTGGQTNDGGLDAA
RIAWELKGIGLRDIRIVYDEKEEVDFSAFPPDLPRHGRDELMTVQEELQQVRGTTAILYI
QTCAAEKRRRRKRGTFPDPDKRVFINTDVCEGCGDCGVQSNCVAIVPAETELGRKRAVDQ
SACNKDFSCLKGFCPSFVTVSGARPRKAATAEVDLGHLPDPALPAIDGTHNLLITGVGGM
GVVTIGATLAMAAHLEGKGVGMMEMAGLAQKGGAVQIHCRIAARPEDITAVRVSVGEAHG
VIGGDLVVTGAGKIQGMMAKGRTGAVVNSHEIVTGAFTRDREFRIPGADLQVSLQARLGA
EAVVFFDASELAQKVLGDAIFSNMVVTGAAWQRGLIPLGRDAIFQAIKLNGAAPDRNKQA
FDLGRWAVLNPEAVAKMLAAEVTARPKSLAEKIDFRADHLRAYQSARLAKKYRRAVEAVT
DPDLRAVVAQNYHKLLSYKDEYEVSRLLRDTRAKAEAAFEGELELTYHLAPPLLSRAGPD
GRPRKRAFGSWIEKAYGPLAALKLLRGTPLDPFGYTAERRMERELIRLYEADLARVQAEM
TPARAEAARALLAWPDMVRGFGPVKAQAVETMRARRAELWAAFEAAEDAVAQAAE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory