PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3608366 (213 amino acids)

SeqID: 3608366 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 584746: KHG/KDPG aldolase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3608366
MTPSEASAQAREICGLAPVIPVLVIHDLAHARPLAEALVAGGLPALEVTLRTPVALDAIA
EMAQVEGGVVGAGTLLTPEDVAAAKAAGALFGVSPGATSRLLDAAEAADLPMLPGAATST
EVMALLERGYTVQKFFPAEANGGAPALKSIGAPLPQVAFCPTGGVSLANAPTYLGLGNTL
CVGGSWVAPQAMMEAGDWAGITELAAEAAALPR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory