PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3608443 (468 amino acids)

SeqID: 3608443 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 7404379: Glutamine synthetase 1]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3608443
MSKDAVLKTIADEEIEYVDIRFTDPRGKLQHVTVIADQVDADFLEEGFMFDGSSIAGWKS
IDQSDMKLMPDTNSAYVDPFYAEKTLCLHCSIVEPDTGEAYDRDPRGTAEKAEAYLKSSG
IGDVAYFGPEAEFFLFDDVRFSVEMNKVSFEVDAQDAAWNSDAEYEMGNMGHRPGIKGGY
FPVNPIDAAQDLRSEMLSTMKRMGMKVDKHHHEVASCQHELGLIFGSLTHQADELQKYKY
VIHNVAHAYGKSATFMPKPIAGDNGTGMHVNMSIWKDGKPLFAGDKYADLSQEALYFIGG
ILKHAKALNAFTNPSTNSYKRLIPGFEAPVLRAYSARNRSGCVRIPWAESPKAKRVEARF
PDPAANPYLCFAALLMAGLDGIKNKIDPGEASDKDLYDLPPEELAEIPTVCASLREALDA
LEADHEFLLAGDVFTKDQIDGYCELKWEEVYAYEHTPHPVEYKLYYSC