PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3608476 (422 amino acids)

SeqID: 3608476 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    4.90
    Periplasmic            2.50
    Extracellular          2.50
    OuterMembrane          0.10
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3608476
MTRLSALSLGAALASATALAAPAFAANTTSLSHEIVLEGLENPWDVAFLEDGTMFFTEKC
LGLSVRLPDGSVNKLLGMKGTDDDYASTAEDLFCEGQAGMQGVAVDPDFAENRQIYVYST
SDLTAPGSNRLLRMTVGEDLASVADRTDIVEDVPYKPAATDHPFGGPGAHNGGRVRFGPD
GFIYLTTGDTHNGEGPQSPTLLAGKVLRIDRDGNAAEGNAPPEGFDPRIYTYGHRNTQGI
TFHPETGAAITAEHGPWHSDEITVLQNGGNAGWDPRPNVGGRGECPDGYCGYSPNQMEGM
DRYERAAFMPMTDLATYPDAMQPIWDNNGWSQGTSSAEFLTGDQWGDWENHLVVGIMGIG
FGGTPIGQRIDVIELNEAGTEVVDVTEMTLPMEPGRFRSLVQGPDGALYAVVDQGMIHKM
MP

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory