PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3608502 (476 amino acids)

SeqID: 3608502 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3608502
MIIPVILAGGSGSRLWPASRKSYPKQFTELVGARSLFQDTLARLQGPHFAAPTIITGDDF
RFITAEQLDDAGVTGADILLEPAGRNTAPAILAAALRHEATPDAVLLVSPSDHRIADGAA
FLDAVAAGKAAAEEGHLVTFGVTPIAAETGYGYLELSGTPVPGQPQVLKSFVEKPDAAQA
AQLLAAGRHLWNAGIFMFKVGTIIDAFERLAPRLVMPVRAAMAAGEDDLCFYRLGAQAYA
RCEDISIDYAIMEAAEALRVIPVSCGWTDLGSWRSVHGASDQDTEGNTVQGSALQIDCRN
SLLKSTAPGTRLVGLGLQNIAAIATDDAILVANLDDSERVKEVVAALKVQGASQAESFRR
CHRPWGYFETLSLGERFQVKRIMVKPGAALSLQSHFHRAEHWVVVEGSAHVTVDRDVSLI
SENQSVYIPLGAVHRLENRGKVPLNLIEVQSGAYLGEDDIVRYEDVYARAPKQNVA