PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3608592 (722 amino acids)

SeqID: 3608592 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1708408: Isocitrate dehydrogenase [NADP]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3608592
MADQTNPDIVYTTVDEAPELASASLLPIIQAFAAPAGVSVGKKDISLAARILAAVAGAPD
HLAELGGLVKTPTANVIKLPNISASQPQLDAAIAELQSQGHDIPAYPANPTTPEEERIKA
AYDAVKGSAVNPVLREGNSDRRAAQAVKNYARANPHRMGEWTADSKTTVMTMGARDFCSN
ETSTTITAAQAGPARIEFVGADGTTVLKEGVPLDAGTVCDATFMSVAALRDFLAETISAT
KEAGVLWSIHLKATMMKVSDPIIFGHAVEVFFAELFEKHPELTGARGGLGTVLNGASDAV
LADYQAVLDKQPPMYMVNSDTGLTNLHVPSDVIIDASLPAIIRAGGKGWGPDGNEADTVC
VIPDSSYAPVYAETIEFFKKHGKLDVTTAGTVQNLGLMAQKAEEYGSHPTTFEAPADGTI
RMIAANGDVLHSHEVEKGDIWRSCTAKKAPIEDWVKLAIERQKLTGYRAIFWLNADRAHD
AELIKHVTPILEAAGVADKFEIMSPAEATVASLETITKGENTIAITGNVLRDYLTDLFPI
LELGTSAKMLSIVKLMQGGGLFETGAGGSAPKHVQQLQAENHLRWDSLGEFCALGESFKF
LAQSRDNAKAGVLGDAVEAATQKVLEFDRSPGRKVGQPDNRASHYWFARYWAEALAAQDK
DAEIAAHFAPIAAKLAENEETILAELAAGAGTPADTGGYYHNDPAKVAAVMRPSPTLNAI
IG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory