PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3608608 (414 amino acids)

SeqID: 3608608 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 729585: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3608608
MPEDAATRDTPGCGPMLPDSGRNAKPLRQAVFEHVRAAGHAPRMDIARALGISPGSVTTL
TSDLIEAGFLTEIAAPARETGRGRPPVALAVVPAARYVLGLRLSDEMHTVSLSDFSGTEL
ATAHRASQPGRYAVEALLTEMATLIDEVLAAAALPRDRVAALGVGLPGAVHHETGRVAWS
PILAGQDHALQAIIEDRFGLPAHLENDANVLTLAELWFGAGRAMQDFAVVTIEQGVGMGL
VLNNRLFRGAQGLGLELGHTKVQLDGALCRCGQRGCLEAYLADYALVREASTALDRDPRS
AQTAAAMLESLFDQAKAGNGAAKAIFQRAGRFLSLGLANVVQLFDPELIILSGARMRYDY
LYAEEVLAEMQRMTLHPATPRSRVEIHAWGDQVWARGATALALSAVTDALMGER