PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3608627 (543 amino acids)

SeqID: 3608627 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3608627
MPGHIVQTAPIPGQKPGTSGLRKTTREFQAPHFLENYVQAIWNGIGGVAGKTLVLGGDGR
YFNAEAAQVVLRMAAASGAARVIVGQGALLSTPAASHLIRKRGTDGGIILSASHNPGGPE
GDFGVKYNGPNGGPATEEVTDRIFAATQAITDYAMLDAQDVDLSTLGETRLGQMVVEVVD
PVADYAALMAEIFDFEAIRALLARGFRLHFDAMHAITGPYAKAILEDTLGAAPGSVVNGT
PSPDFGGGHPDPNPIWAKELVDRMMGPDAPDFGAASDGDGDRNMIMGRGIYVTPSDSLAV
LAANATRVPAYADGLAGVARSMPTSRALDRVAEALSIDCYETPTGWKFFGNLLDAGRATL
CGEESAGTGSDHVREKDGLWAVLFWLNILADSRASVADLMADHWARFGRHYYSRHDYEAV
DTAAAKGVMDALRARLADLPGTTAAGRQIAFADEFSYDDPVDGSHSAGQGLRVGFTDGAR
LVIRLSGTGTVGATLRVYLEAFVPGPEGLDRDPQEALAPMIAAAEALAEIATRTGRTAPD
VIT