PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3608669 (747 amino acids)

SeqID: 3608669 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1172699: Phosphoenolpyruvate-protein phosphotransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3608669
MADSIETESRKLLRRLQATLAEAGAGQERLDKITSLIADSMRTEVCSIYLFRDPDTLELC
ATEGLNPEAVHKTRMRIGEGLVGRVARTSRAINTADAPSTKGFRYMPETGEEVYSSFLGV
PIQRLGETLGVLVVQSRAKREYSTDEIYALEVVAMVLAEMKELGAFTGEGAALAAPHQNP
IMIRGGVAQEGIAKGHVYLHEPRVVVTKLVSDDPEAELVRLRGAVDQLRVSVDEMLDIAP
KGDAEQLQILEAYRMFANSRGWMRRMEESIDSGLSAEAAVEKEQSAARSRMERVPDAYLR
ERLHDLDDLSNRLLRLLTGQGGETGAEIPADPILVARNIGPGELLDYGRALKGIILEEGS
VGSHAAIVARALAIPLIVHAKRITTEALNGDLVLVDGEQGIVHLRPDDRVLAHFTDKIAM
QAKAQERYASIRDKPAETLCGSVISLTMNAGLMADLPSLPSSGAEGVGLFRTELQFLTRS
KVPRRSELAEIYARVLDAADGKRVVFRTLDIGSDKVLPYMKPQDEPNPALGWRAIRVGLD
KPGVMRMQLQALIRGANGRPLTVMFPFIAQLEEFTRARDALLREIDREAALGRTLPESVE
IGAMLETPSLAFAPNSFFEMADFVSIGGNDLKQFFFAADRENERVRRRYDTLNVSFLSLI
ELIVSRCRDVGTPLSFCGEDAGRPIEALCFAAMGLRSLSMRPASIGPVKHLLRRSDLREA
RAVITQARASGAMTVRPAVMEWLRHQN

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory