PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3608723 (1000 amino acids)

SeqID: 3608723 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 7388257: Sarcosine oxidase subunit alpha]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3608723
MTEYRVEGRGRVNRKTPVRFTFDGQTYEGLKGDTVASALLANGVHLMGRSFKYHRPRGVV
TAGSEEPNALVGTTRGKGRFEPNTRATIQEIYPGLETESQNKWPSLKFDLGAINDRLYML
FSAGFYYKTFMWPRSFWDSVYEPLIRKAAGLGKAPTEVDPDTYASRYMHCDVLVVGSGPS
GIAAALTAGRAGSKVVLVDENAEMGGTLLSEPSVSIDGQPAWEWLEGAMAELDRMPNVRR
MTRTTAMGYYHQNMIGMVEKLTDHMAEIPEGAPRERMWRVRAREVVLAQGAIERPMVFDG
NDTPGILMAGAAQTFLNRFGVLVGKSPVVLTSHDSAWYSAFDMADAGASVVAIVDTRNDV
SQALRDEAQARGLKTYLGYTATGTKGRLRIKALRVNPVRDGKVGAGHLLFCDAVLMCGGW
TPSLHLFSHTKGSLHWDAESKAYLPGKKSEDVHIAGAGRGLWGIASALEDGAKAGAAAVQ
SLGGSAGSATYAVADDRTGTGVTQKELPTDRSPGKAKAFVDFQNDVTAKDIRLAVREGMK
SIEHVKRYTTNGMATDQGKLSNMNGLTIAADALGKEAPQVGLTTFRPPYTPTTFGAFCGY
HKGAHFEVTRKTPIDPWAEEHGAAFEPVALWRRAWYFPQAGEDMHKAVARECKSTRESVG
MFDASTLGKIEVSGPDAVEFMNRMYTNPWTKLGVGRCRYGLLLGEDGFIRDDGVIGRMRD
DLFHVTTTTGGAARVLNMMEDYLQTEWPELKVWLTSTTEEWATIALNGPNARKLLAPFVE
GADISADAFPHMSVVECTVAGFPSRLFRISFTGELGFEINVPARHGKALWEKLWEAGQQY
DICPYGTETMHVLRAEKGYIIVGQDTDGTVTPQDAGIGWAIGKAKPDFVGKRSLQRPDIV
APGRKQLVGLLTEDPKTVLAEGAQIVDDPKQAKPMKMIGHVTSSYWSETLGRSIAMAVVE
GGFDRMDSTLHIPTESGDAVPAKVTGTVFYDPAGDRLKVE