PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3608767 (451 amino acids)

SeqID: 3608767 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599346: acetoin catabolism protein AcoB[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3608767
MATEILMPALSPTMEEGTLAKWFVKEGDSVSSGDILAEIETDKATMEFEAVDEGIIGKIL
VESGTDGVAVNTAIAVLIQDGETLSDTVAAAPSDEATDQQPAPAAPVTPARIVIPDEPDL
PPGTQMKSMTVREALRDAMAEEMRRNENVFLMGEEVAEYQGAYKISQGLLDEFGSKRVID
TPITEHGFAGLAVGAAFGGLNPIVEFMTFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVF
RGPNGAAARVAAQHSQDSAAWYAHIPGLKVAMPYSASDAKGLLKSAIRDPNPVIFLENEI
LYGRSFEVPMIDDYTVPFGKARIWREGRDVTIVSFGIGMTYALEAADRLAKDGISAEVVD
LRTLRPLDTETVIASVQKTNRCVTVEEGFPVASIGNHISAVLMQEAFDYLDAPVINLTGK
DVPMPYAANLEKLALVTTDEVIEAVHKVTYR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory