PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3608920 (1221 amino acids)

SeqID: 3608920 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 20141685: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3608920
MNRAFDISSQIDNPFRAQVRAHYTAEETALLKSLAARIKLSAHEREKAAAAGARYVTRVR
NETRPSMMEAFLAEYGLSTSEGVGLMCLAEALLRVPDADTIDDLIEDKVAPSNWGAHLGH
SSSSLVNASTWALMLTGKVLDEDPRGPARALRGLVKRLGEPVVRTAVGQSMKVLGRQFVL
GQTIEEGLKNARELEKKGFTYSYDMLGEAARTDADARRYHAAYAQAITAIARQATGDVRS
SPGISVKLSALHPRYEYTHRHSVMADLVPRAAALVKQAAQAGIGFNVDAEEQDRLDLSLD
VIEAMMSDPDLDGWDGFGVVVQAYGRRAGPVIETLYDMAERYDRKIMVRLVKGAYWDTEI
KLAQELGVERFPVFTRKNNTDVSYMACAQMLLDRRDRIYPQFATHNAHTCAAVLQMAGNA
RDCFEFQRLHGMGASLHQIVKETEGTRCRIYAPVGAHQDLLAYLVRRLLENGANSSFVNQ
IVDPDIPAEAISADPVSEMEKLGDQIPNPAIRQPSDLFAPDRRNSRGYRVNEPASILPLM
TAREAFAETTWHARPMLAGGRDPTGPTREVHSPADKTRLVGTVQEASAEDVACALDAAET
GFRDWSARPVSERADMLRKLADMYEDNIAELTAITTREAGKTVLDGIAEVREAVDFLRFY
ANEAERLEEEDPGRPRGIFVCISPWNFPLAIFTGQIAAALVMGNAVLAKPAEQTPIIAAR
AVQMMRDCGLPDAALQLLPGDGPMVGGPLTSDPRIAGVCFTGSTEVAMIIHKALAKNAGP
EAVLVAETGGLNAMIVDSTALHEQAVRDILISSFQSAGQRCSALRILYVQEDVHDKLMEM
LSGALDALVIGDSWNLDVDVSPVIDADAQSDILGYIDQHRKAGTLIKTLAAPDSGTYVTP
AIVKVGGIADMEREIFGPVLHVATFKANEIDQVVDAINARRYGLTFGLHTRIDDRVEQIV
ERIQVGNVYVNRNQIGAIVGSQPFGGEGLSGTGPKAGGPLYLTRFRKVGKSTSHPAPQGA
VLGKAALNTALSSLDARNWAARPDRVHILRMALSGSTGVVRRALSETAAFDMSPQTLPGP
TGESNRLSMVPRGTVLCLGPTPEIAMAQAVQALGAGCAVVIALPGSTPLSQPLSDAGAPV
VTLDGTVDCVTLTELTGIEVVAAAGASDWTRTLRVALSQRDGPIIPLIVDEIAPERYVLE
RHLCIDTTAAGGNAKLLAASS