PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3609052 (320 amino acids)

SeqID: 3609052 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 11128402: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3609052
MTSFKTQIAAVMAGVLALGTSPALADYPERPVTIIVPWGAGGGTDTIIRLFSIGFEEAMG
QPINVVNRTGGSGVVGHSAIANATPDGYTLGACTSEITYFETIGLAPITPASFDLISRLA
VIPAGVTVAADSPYNSLEELIAAAKKGGLSSSGSGLGGPWHMAIAGMMKQVGGDVNTVQF
IPSQGGAPALQDLVAGGISMFTGSPIEARALADAGEVKILGIMSDERSPAFPDVPTLKES
GVDWSLTNWFSLCAPAGLPEDVKARIEAAAEQAHGSAEVQEALAQRGITPLFDGSEAFSS
YAAAFANDAAGLLTDLGLAQ

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory