PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3609273 (791 amino acids)

SeqID: 3609273 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3609273
MPKDGGIGASSKRREDVRFLTGRGRYTDDINLNNQTYAYFLRSEVAHGKINGIDTAAAEG
MDGVIRVFTAKDFEGVGGVPCGWQVTDIHGQPMKEPKHPVLAEGKVRHVGDPIAVVVAES
LEQARDAAEAIELDIEELPAVMDMKAALAEGATKVHDDLDDNLCYEWGFVEENRAAVDEA
IKNAHHVTTLELTNNRLVANPMEPRVAVGDYHPGTQDYTLYTTSQNPHVIRLLMGAFVLG
IPEHKLRVVAPDVGGGFGSKIYHYAEEAFVTFASGQIGRPVKWTSSRSEAFVSDAHGRDH
VTKIELALDENHKFTALRCDTYANMGAYLSTFAPSIPTWLHGTLLAGNYTTPLIYTNVKA
VFTTTTPVDAYRGAGRPEATFQLERVVDKAARELGVDPAELRRINFIKPEQFPYDTPVAV
TYDTGNYHATLEKGLEMAGADTFEARAAESKARGKLRGFGLAHFIEACGIAPSNLVGQLG
ARAGLYESATVRVNATGSISVMTGSHSHGQGHETAFPQVVAEMLGIDENMIEIVHGDTAN
TPMGMGTYGSRSIAVGGSAMVRATEKIINKAKKIAAHLLEAAEGDIELKDGAFTVAGTDK
SVAWGDVTLAAYVPHNYPLEDIEPGLEETAFYDPSNFTYPSGAYICEVEVDPDTGKVDVL
AFTAADDFGNVINPMIVEGQVHGGVAQGIGQALLENCSYDADGQLLSGSYMDYTMPRADD
LPMFEVDHSCITPCTHNPLGVKGCGEAGAIGSPPAVVNAVIDALHRAGQTHVTHIDMPLT
PSRVWAAIHGK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory