PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3609294 (954 amino acids)

SeqID: 3609294 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597641: glycine cleavage system protein P2[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3609294
MGFSLTDYAPYDFANRRHIGPSPKEMGQMLATLGVPSLEALINEALPEGIRRRDPLAFGP
ALSERDTLHRMRELADKNTVLTSLIGQGYHGTHTPPVILRNILENPAWYTAYTPYQPEIS
QGRLEALLNFQTMMADLTGLPIANASLLDEGTAAAEAMAMAQRASKSKARGFFVAEDCHP
QTIDVIRTRAEPLGIEVIVGAVDALDPEAVFAALFQYPGSYGHVRDYSDVIEALHGARAL
AVVAADPLALTLLKSPGEMGADIAIGSTQRFGVPMGYGGPHAAYMTCTDALKRSMPGRII
GVSVDARGNKAYRLSLQTREQHIRREKANSNVCTAQALLAVMASMYGVFHGPDGLKAIAQ
TVHRKTARMADGLTELGFKVDPQDYFDTITVKVGSMQGVILAAALREGVNLRKVGTDRIG
ITLDELTLGRTIEAVWRAFGAEGMVYDKTRMVYHLPQEMLRESSYMTHPIFHMNRAEAEM
TRYMRRLADRDLALDRAMIPLGSCTMKLNATVEMLPLTWPEFANLHPFAPADQAAGYHEM
IAELSQMLCDVTGYDAMSMQPNSGAQGEYAGLLAIRGYHRARGEGHRNICLIPTSAHGTN
PASAQMVGWKVVVVKSAENGDIDLEDFRAKAEQHSENLAGCMITYPSTHGVFEEIVREVC
DITHAHGGQVYIDGANMNAMVGLSAPGDLGGDVSHLNLHKTFCIPHGGGGPGMGPIGVKA
HLAPHLPSHATATGAGFGDAGAVASAAYGSPSILTISYAYCLLMGGAGLTQATKVAILNA
NYMAKRLSAGFPILYANDKGRVAHECILDTRVLDKIAGVTVEDVAKRLMDCGFHAPTMSW
PVAGTLMVEPTESEPKAELDRFCDAMLAIREEADAIAAGSLDAENNPLKRAPHTVEDLVG
DWDRPYSREQACYPPGAFRVDKYWPPVNRVDNAYGDRNLVCTCPPVEDYAEPAE