PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3609471 (657 amino acids)

SeqID: 3609471 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3609471
MPMTETKKDRPWLFRTYAGHSTAEASNALYRGNLAKGQTGLSVAFDLPTQTGYDSDHVLS
RGEVGKVGVPVAHLGDMRALFKDIPLDQMNTSMTINATAPWLLSLYIAVAEEQGADVTKL
QGTVQNDIIKEYLSRGTYICPPKPSLRMITDVAAYTREHLPKWNPMNVCSYHLQEAGATP
EQELAFALATATAVLDDLKGKVPAEHFPAMVGRISFFVNAGIRFVTEMCKMRAFVTLWDE
ICRDRYGVEDPKFRRFRYGVQVNSLGLTEQQPENNVYRILIEMLAVTLSKNARARAVQLP
AWNEALGLPRPWDQQWSLRMQQIMALETDLLEFDDLFDGNPAVDRKVAELMEGARAELAT
IDGMGGAVAAIEYMKSRLVEANSDRLGRIEGGETVVVGVNKYQQGEPSPLMDADGGIMVV
DPAVEADQIARLQAWRAARDEDAAQKALADLREAALSGANVMPASIAAAKAGVTTGEWGL
EIRKSFGEYRAPTGVSANPSNRTEGLDEIRDAVSAVSAKLGRKLKFLVGKPGLDGHSNGA
EQIAARARDCGMDITYEGIRLTPEEIVRAAREQDAHVVGLSILSGSHIPLIEELMGRMRE
ADLTHIPVIVGGIIPEDDAERLRAMGVAKVYTPKDFELNRIMFDIVGLVDDTPIAAE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory