PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3609492 (320 amino acids)

SeqID: 3609492 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 126053: L-lactate dehydrogenase P]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3609492
MARPKIALIGAGQIGGTLAHLVALKELGDVVLFDIADGTPQGKALDIAESGPVERFDASL
KGTTDYADIAGADVCIVTAGVPRKPGMSRDDLLGINLKVMKSVGEGIAANAPDAFVICIT
NPLDAMVWALQQFSGLPKEKVVGMAGVLDSARFRHFLAEEFNVSMKDVTAFVLGGHGDTM
VPLTRYSTVAGIPLPDLVEMGWTSQEKLDAIVQRTRDGGAEIVGLLKTGSAFYAPAASAV
EMAEAYLKDQKRLLPCAAYCDGEFGLNDMYVGVPTIIGAGGIEKVVDIKLGKDEQAMFDN
SVNAVKGLMEACKGIDDSLV