PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3609511 (378 amino acids)

SeqID: 3609511 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595514: hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3609511
MQTPGSEAELAEVIAGADAPLRIRGGGTRPIGKPVAGEVLSTAALSGIGLYEPGALTLVA
QAGTPLAEVEAALAAERQRLPFEPMDHRGLLGSAGEPTLGGVVAGNVSGPRRIQAGACRD
SLIGVRFVTGEGAVVKNGGRVMKNVTGYDLVKLMAGSHGTLGVLTEVSFKVLPQTETEAT
LTVTGLDDATAVAALSRALGAPYEVSGAAHLPRGADGPETHVRIEGFETSVIYRTGKLTE
LLGKFGPVRVEADPAASRSTWVAIRDVAAFHGTAGDVWRISVKPCDGPAVGAALGGDVIY
DWGGGLVWAHVAPGRDVRGALAGLPGGFSGHATLIRAAEATRAAQPVFQPEPAPLAAISA
GLRAKFDPKGILNPGLMA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory