PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3609512 (480 amino acids)

SeqID: 3609512 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600548: glycolate oxidase subunit GlcD[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3609512
MEMPTPDAGILAKKDRVVALLQEVLPRDAVIHEPHETRAYECDALTAYKCPPLAAVLPSS
TEEVAAVLKICHAEGVPVVPRGSGTSLAGGALPTADCVILGVARLNKVLETDYDNRIIRV
QSGRTNLSVSGAVEEEDFFYAPDPSSQLACAIAGNIAMNSGGAHCLKYGVTTNNLLGVTM
VMMDGTVVTIGGAHLDAGGLDLLGVICGSEGQLGVVTEATLRILRKPEGARPVLIAFDEN
EVAGACVADIIKAGVLPVAIEFMDKLCIETCENFAKAGYPECEALLIVEVEGSEAEIDAQ
LGVILDIARKHNPVELRQSQSAEESAKIWLGRKSAFGAIGQLNDYMCLDGTIPVSELPYV
LRRIGEMSKEYGLQVGNVFHAGDGNMHPLILFDANKDGDLELCEAFGAEILKLCVEVGGC
LTGEHGVGIEKRDLMGAQFTGADMEMQLRVKDVFDPAWLLNPAKVFPLAVTEARRGRAAA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory