PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3609934 (292 amino acids)

SeqID: 3609934 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600153: probable phosphoserine phosphatase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3609934
MFVATLLTDPAAPALEEAMVTALRDAWGGGDARWLAAGEAAEFPLQEVPGNLWQVWADLQ
GQRVDLVVQPAAGRRKAMLLADMDSTMIRQECIDELADEAGVGPRVAEITARAMNGELDF
EGALRERVGLLAGLDAAVIDRVLETRIDLMPGGRALVATMKRDGAYAALVSGGFTAFTAR
VAALLGFDENRANTLEIVDGVLTGRVIEPILGRAAKVAALEEITARLGISEADVMAVGDG
ANDLGMLGRAGAGVALHAKPVVAAECDRRINFGDLSALLFLQGYSRADFATT

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory