PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3610086 (752 amino acids)

SeqID: 3610086 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600239: malic enzyme[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3610086
MSGNNKITREEALAYHLEPTPGKLEVSASTPMSTQRDLSLAYSPGVAVPCEAIAENPETA
YDYTTKGNLVAVITNGSAVLGLGNLGALASKPVMEGKSVLFKRFADVNSIDIELDTEDPD
AIIQAVKLMAPTFGGVNLEDIKAPECFIIEQTLKEQLDIPVFHDDQHGTAVITAAGLLNA
LRLTGKAIEDCKIVLNGAGAAGIACIELIKAMGAKPQNCIVCDTKGVIFQGRTEGMNQWK
SAHAVKTEMRTLDDAMKGADVFLGVSVKGAVTQAMLESMADDPVIFAMANPDPEITPEEA
HAIRPDAIVATGRSDYPNQVNNVLGFPYLFRGALDIRARAINDEMKIACAEALADLARED
VPDEVALAYGRKLSFGRDYIIPTPFDPRLIHTVPLAVAKAGMDTGVARRPIVDMDGYEQS
LRARMDPTASMLQGMFARAKGTQARMIFAEGDDIRVLRAAVTYQRSGLGKALVVGRQDDV
KTRLEAAGIGDAFRELEIVNAGNTRHLETYKEFLYGRLQRKGYDTSDIHRLAARDRHAFS
ALMLAHGHGDGLVTGATRKSAHVLGLINTVFDAGAEDGAVGVTALLVKGRIVLIADTLVH
EWPDEEDLADIATRAAGTARSLGLEPRVAFVSFSTFGYPVSERATKMHRAPRVLDARGVD
FEYDGEMTVDVALDPEIMAQYPFCRLSGPANVLVVPARHSASISVKLMQQLGDATVIGPI
LSGVGKPIQLCSATSTANDILNMAVLAACRVG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory