PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3610172 (658 amino acids)

SeqID: 3610172 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597193: probable AMP-binding enzyme[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3610172
MTEQKPIASGEIIKAVSEEFAANAHIDSSKYSEMYAASVSDPEGFWGEHGRSLDWIKPYT
KVKDTSFAHDDVHVRWFEDGTLNVAANCIDRHLATRGDQTAIIFEPDDPAEPAQHITYRE
LHRQVCKLSNVLEDLGVRKGDRVILYMPMIPEAAYAMLACARIGAIHSIVFAGFSPDALS
ARINGADARLLITADYAPRGGRQTPLKSNADAALLHTRDDVKMLVVKRTGGQTTWVDGRD
FDYHELMLEADEVQHPVEVEAEHPLFILYTSGSTGQPKGVVHSSGGYLLYAAMTQKYVFD
VHEGDVYWCTADVGWVTGHSYIVYGPLANGGTTVMFEGVPTYPDASRFWQVCDKHKVTQF
YTAPTAIRALMAKGPEFVETCDLSSLRVLGTVGEPINPEAWNWYNDLVGKGRCPIVDTWW
QTETGGHLLTPLPGAIATKPGSATLPFFGVQPVVLDPHSGAEITETECEGVLCLKDSWPG
QMRTVYGDHERFVKTYFSDYKGYYFSGDGCRRDADGYYWITGRVDDVINVSGHRMGTAEV
ESALVAHAKVAEAAVVGYPHDIKGQGIYCYVTLMNGEEPSEELRKELRTWVRTEIGPIAA
PDLIQWAPGLPKTRSGKIMRRILRKIAEDDFGALGDTSTLADPSVVEDLIENRMNKKG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory