PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3610430 (413 amino acids)

SeqID: 3610430 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597204: fumarylacetoacetase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3610430
MSGLIHSWVPGANDPAGAFPLNNLAFGVFSTGDGPRCAVAIGDKVLDLAALQAAGLLPDH
GFDAPALDTFMGRGQPAWQAVREALTELLRAGAETAPVRAALHDRAGVRLHLPFTLAEFT
DFYAGRQHAFNVGSLFRDPANALPPNWLHMPIGYNGRASTVVVSGTPIHRPAGQIKDPSD
PMPRFGPCERLDFELELGAVVGTPSQMGVPVTVDEADEMIFGYVLLNDWSARDIQAWEYV
PLGPFQGKAFATTISPWVVPRAALAPFRCGPPVREVPLLPHLRDTGPMFHDIDLAVTLAP
PGGAPTEVCRTNSNALYYSAAQLLAHHSTSGCAMRTGDLLGSGTISGPEKGMFGSLLEIT
WGGRDPVALAGGATRRFLADGDTVTLKGEARGDGYRIGFGTCTGTILPAPKRP