PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3610525 (533 amino acids)

SeqID: 3610525 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [13 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50283: NA_SOLUT_SYMP_3 Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 8134671: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3610525
MGDAKFDLHWIDYAIVVIYFIGVIAHGVYVSRKNEEGADGYFLAGRSLPWYLIGFSLFAS
NMSGSSFVGLMGGAYANGIVIFNYEWTAALVLILFAIFVLPSFLKAKISTVPEFLEQRYD
VRSRRAFSIFTILAILFIDTAGALYAGGLVISNVTGYLNLWTAVAVLALVAGIYTILGGL
SAVVVTDTVQAILLIIGAAILFWLGLDEIGGWEQLFVDIPEGHDQLILPADDDFLPWTGL
WGVVLLGFYYWTINQFVVQRTLGAKNLKEGQIGALFAGFLKLPNIFLMIIPGVIALKLYP
ELETPDLAFPTLAFELMPIGVRGLIMAALIAAIMSSLDSAMNSASTLVVKDFVEPIWEVD
EGKQVWIGRLVTGAVMVFGAIYAPSIAGFESLFSYFQSSLSYIIPTIVVVYIVGLFVPWL
NGNGAFWTIILGLVVGIPLFIMKEVTGVWAGMGLPEIHYTIMSTLMMCLGLATHFGISAL
TRKADKENIEDLVWSAADTKAIFTQWEEPLWQDRTIWAGLLILSTIGFVAWFW

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory