PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3610816 (793 amino acids)

SeqID: 3610816 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3610816
MTIQFGNPDRPNSYIGKTVPRPNAAKLVQGRGQYVDDITLPRMVHVAFVRSPFAHAQITG
IDAAEALATKGVLRVFTGADLAEVCTPWVAVLAHLKGLKSPPEHPIAIDRAVWVGEPVAA
VVATSRAAAEEGAALVEVDYDPLPAVTDTMTALDADTPVIHPDLGDNLAFRRLHEEGDVD
AAKAAAHKVVTARFRTARHTGVTLEPRSILVDWNPAEGQMTAYHATQAPHMMQSVLAKHL
DIPESRVRVICGDVGGSYGIKVHVYPDEVATAAIAKVMGRPVKFIADRLESFTTDIHARD
HEIEASIAVDADGKILAIDVNDWTGIGPYSVYPRTSAIEGNQVVNLCGGPYDFANYRART
SVVFQNKTPTCQYRAVGHPIAVAITEGLVDMAAAELGMDPVEIRRRNMYADDAYPVTSPA
KMKFEGLSHHASMDKLMAMMDYDALRADQAEARKAGKLRGLGIASFIELTNPSPFMYGIG
GARISAQDGCTVRMDPDGSVVALSGVTEQGQGTEAMLSQVVAEGVGVPPSQVRVITGDTQ
VTPYGGGTWASRGAGIGGEAALQAAKALRDSILQVAAAMLQAAPDTLDIRDGQVVDAATG
AERMPLAELGRIVYFRGDTLPKDLPRELVQTRHFITMDYPFAFTNGVQASYLEVDPETGV
VTLLKHWCVEDCGRVINPQLVDEQIRGGIVQGLGGALYEEIHYDADGQLLNGSMADYLVP
MAAEMPDMQIAHVETPTGESELGAKGAGEAGTAGAPAAVMNAINDALRPLGAQVTEMPFT
PERILRAMGKIEG