PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5207771 (616 amino acids)

SeqID: 5207771 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595550: dihydroxy-acid dehydratase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5207771
MAKLRSATSTQGRNMAGARALWRATGVKDSDFGKPIVAIANSFTQFVPGHVHLKDMGSLV
AGAIEEAGGIAKEFNTIAVDDGIAMGHGGMLYSLPSRELIADSVEYMVNAHCADALVCIS
NCDKITPGMLMAALRLNIPVVFVSGGPMEAGKTKLSDKLIKLDLVDAMVAAADDRVSDED
SEKIERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGSLLATHSDRRELFLEAGRRVM
ALANRYYRDDDESALPRNIASFKAFENAMALDIAMGGSSNTVLHLLAAAQEAKVDFTMAD
IDRLSRQVPHLCKVAPSTPKYHMEDVHRAGGVMGILGELDRAGLLHTDVSHVAGENLKAV
LVQYDLVQTQDEAVQQFYAAGPAGIPTTKAFSQSCRWPSLDVDRQEGCIRTREFAFSQEG
GLAVLSGNIAADGCIVKTAGVDEANHTFVGHARVYESQDDAVAGILGGEVVAGDVVVIRY
EGPKGGPGMQEMLYPTSYLKSKGLGTSCALITDGRFSGGTSGLSIGHVSPEAAAGGTIAL
VETGDRIEIDIPARSITLAVSDEVLETRRQAMQARGKQAWKPVNRERSVSLALKAYAMLA
TSADKGAVRDVSKLED

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory