PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5207980 (457 amino acids)

SeqID: 5207980 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [11 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 399339: Na(+)-linked D-alanine glycine permease]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5207980
MNFHALLSEINAIVWGPITLCLLVGTGLYLTLRLRLIQVFKLPLALRLLFKPASGQGDLS
SFAALCTALSATIGTGNIVGVATAIKVGGPGALFWMWLAAFFGMATKYGECMLALKYRTT
DARGNIAGGPMYYIERGLGLGWLAKLFALFGVGVAFFGIGTFAQVNAISDAMTIAFHVPA
WVTALVLTLLVAAVTLGGVKRIAKVAQKLVPSMALGYVLACLWILVTFSEQIIPALQLVI
HSAFSPISAAGGFLGATVAQAIQIGIARGVFSNESGLGSAPIAAAAAKTKEPVEQGLVSM
TGTFFDTLLICTITGLVLIITGVWSGDAAGAAMTSAAFATGGSAVIGQYLVTIALVCFAF
TTILGWHYYGERCWYYLTGHKLGERGIKIYQFIFLSLIAVGAFIQLDLIWLLADTVNGLM
AIPNLIALIGLRKVIIADTLSYFAARDSQGAQQELTA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory